PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family GeBP
Protein Properties Length: 397aa    MW: 44129.9 Da    PI: 4.599
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011274genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573118.34.2e-37106204197
     DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                klfqrlw++eDei lLqG++d+++++g+ + ++ d+  fy+++k++++++++k+qlveK+rrLKkK+++   k++sgk+++f+++hdq +fe+s+kiW 
  Cla011274 106 KLFQRLWTDEDEIELLQGFLDYTMQRGTtHHHQnDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWS 204
                579*************************633446****************************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.7E-35108204IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDPRNDAVFP DEDLEDDEES LDDEDDDEEE EELNDDPSPS TSSAGAVPVP SVSATVTVAT  60
PAVSVVPPPS IVSISSADLI RQRLETATAE PLTLQGEKKP LDESRKLFQR LWTDEDEIEL  120
LQGFLDYTMQ RGTTHHHQND TALFYDQIKS KLQLDFNKNQ LVEKLRRLKK KYRNVIGKIS  180
SGKDFNFKSP HDQATFEISR KIWSNTGRIG VDDNALDDDE PAAPTPYASY MDHRNEEMMA  240
NCAEKKPTPT PKSRKRTRPG SGIRMDVPRS SNENLSKEKN STYHNNTNNN ENVNNVAVAG  300
LIEETVRSCL SPLFKELLNT SMGGGLCGGS RGFSGLASHP IPLSFGGASI NFGGGGEMAD  360
ERWRKQQILE LEVYSKRLEL VQEQIKTALE DLRSMGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135666.20.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0A0M1Q30.0A0A0A0M1Q3_CUCSA; Uncharacterized protein
STRINGGLYMA19G43180.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-67DNA-binding storekeeper protein-related transcriptional regulator